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Ion PGM System Sequencing System

The Ion PGM™ system from Thermo Fisher Scientific is a sequencing solution for biomedical, microbiological and genomic research. It offers reliable sequencing with throughput flexibility through the use of different chips (Ion 314, 316, 318). Designed for research laboratories, the system enables targeted DNA and RNA analysis with integrated data processing via Torrent Suite™ software. Its compact design, reproducible performance and multiple applications make it an essential tool for research projects requiring precision and adaptability.



Description

Ion PGM™ System: a flexible sequencing system for accurate biomedical research

The Ion PGM™ System from Thermo Fisher Scientific is a sequencing platform that meets the needs of researchers involved in the study of human diseases, microbial genomics and ancient DNA analysis. It stands out for its ability to deliver reliable, reproducible results while adapting to a variety of applications thanks to a wide range of chips and integrated software solutions. The system is particularly used in the fields of cancer research, hereditary diseases, epigenomics, metagenomics and agricultural genomics.

The Ion PGM™ sequencer can be used to perform targeted DNA and RNA sequencing protocols, copy number analysis, de novo sequencingof microbial genomes, and bacterial and viral typing. It also supports SNP verification, small RNA sequencing, ChIP analysis and methylation. To meet these needs, several target selection solutions are available, such as Ion AmpliSeq™ or Ion TargetSeq™ technologies, as well as library preparation kits compatible with up to 384 barcodes via Torrent Suite™ software.

The system consists of two components: the Ion PGM™ sequencer and the Ion Torrent™ server, in the form of a stand-alone computer tower. The latter performs signal processing, base calling, alignment and variant identification. Ion Reporter™ software can be used as a complement to provide detailed annotation and reporting of results, suitable for simple or comparative analyses (e.g., normal tumour vs. mutated tumour).

With its compact design and compatibility with multiple chip types, the Ion PGM™ allows users to choose the throughput level best suited to their projects: from a few hundred thousand to several million reads per sequence. Its ease of use, compatibility with numerous kits and software, and adaptability make this system a strategic choice for laboratories seeking a high-performance sequencing platform without sacrificing flexibility.

Features

  • Compatible chip types: Ion 314, Ion 316 and Ion 318 (version v2 or v2 BC)
  • Readout throughput: 400,000 to 5.5 million reads depending on the chip used
  • Run time: between 2.3 and 7.3 hours depending on fragment length (200 or 400 bases)
  • Data production: from 30 Mb to 2 Gb depending on the chip
  • Output formats: FASTQ, SFF, BAM, VCF
  • Supported applications: targeted DNA/RNA sequencing, microbial de novo sequencing, typing, SNP, methylation
  • Data analysis: Torrent Suite™ Software (primary analysis), Ion Reporter™ Software (secondary analysis)

Technical Details

  • Operating temperature: 20–25 °C (68–77 °F)
  • Humidity: 40–60%, non-condensing
  • Altitude: Below 2,000 m
  • Gas connection: Nitrogen, grade 4.5 (≥99.995%), 35–45 psi, 0.25" connection
  • Dimensions: 61 x 51 x 53 cm (W x D x H)
  • Weight: 30 kg (sequencer only)
  • Power: 100–240 V, 50/60 Hz, consumption 200–300 W
  • Interfaces: Ethernet 1 GigE, 2 USB 2.0 ports
  • Clearance required: 30.5 cm at the rear, 10 cm at the sides, 90 cm at the front

Compatible Accessories

  • Ion Chef™ System: automated preparation
  • Ion OneTouch™ 2 System: library enrichment
  • Library kits: Ion AmpliSeq™, Ion Xpress™, Ion Total RNA-Seq v2
  • Targeting solutions: Ion AmpliSeq™, Ion TargetSeq™
  • Normalisation and barcoding kits: Ion Library Equalizer™, 384 barcodes Torrent Suite™

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